A STAR RNA-seq Log.final.out report shows: Uniquely mapped r…
A STAR RNA-seq Log.final.out report shows: Uniquely mapped reads % = 42%, Unmapped (too short) % = 35%, Multi-mapping % = 3%. What is the most likely interpretation and appropriate first troubleshooting step? A) This is excellent-quality data requiring no further action B) The low unique-mapping rate combined with a high “too short” unmapped percentage suggests possible adapter contamination or an incorrect/mismatched reference genome; the appropriate first step is to re-check FastQC adapter content and confirm the correct reference/species were used C) The high multi-mapping rate is the primary cause of the poor result D) The library was simply over-sequenced and should be down-sampled
Read DetailsWhich sequence of tools represents the correct procedure for…
Which sequence of tools represents the correct procedure for generating per-sample quality reports and then aggregating them into a single interactive summary report across many samples? A) FastQC –> MultiQC B) MultiQC –> FastQC C) Bowtie –> FastQC –> MultiQC D) FastQC
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